1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctatgctgaattgaagcatcaacagaagtagagaactagcctctattttgaaaagaaatgatactgctctaacttctcaaatgggatgttttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGAAGGCCTTACAAGGCCATGAAAATGTTGTACATTTTTACAATGCATTTG
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGEST: gi|29682049|gb|CB678324.1|CB678324
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGEST: gi|117210596|gb|CT863578.1|CT863578
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTCGAAGACGTAAAGCGAGAAGTTAAAATACTG
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
ttttgaaaagaaatgatactgctctaacttctcaaatgggatgttttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGAAGGCCTTACAAGGCCATGAAAATGTTGTACATTTTTACAATGCATTTG
ctctaac putative branch site (score: 2)
ttttcgtt putative PPT
aaaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatgctgaattgaagcatcaacagaagtagagaactagcctctattttgaaaagaaatgatactgctctaacttctcaaatgggatgttttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGAAGGCCTTACAAGGCCATGAAAATGTTGTACATTTTTACAATGCATTTG
- -tgctgaa
- - - - - -tgaagca
- - - - - - - - - -caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggatg