1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgtgtttcgggtgcgcgtggtggtgatgcttcgcctggattgctccttgtttctgcgtataaggctagggtgatggtcgtttaattttcgtggtcgaggttttgatttttgtttagtttttccgaaactttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGCTGTGCGGCGACAATTTCCCCGAGTGGATATCCTTCCCGCAGTATGAGC
species | Oryza sativa |
transcript | LOC_Os07g22640.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|29624991|gb|CB630002.1|CB630002
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|88571744|gb|CI663117.1|CI663117
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCACCAGGAACCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|88330676|gb|CI635310.1|CI635310
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGGGGATATCAAGGTCCTTEST: gi|88570414|gb|CI661787.1|CI661787
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTT
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|87006718|gb|CI285752.1|CI285752
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|44674448|gb|CR287882.1|CR287882
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGTCGTGTGATG-AGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|88307913|gb|CI646348.1|CI646348
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTEST: gi|29630138|gb|CB635147.1|CB635147
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGT
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|58606676|gb|CK034709.1|CK034709
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCGTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|29662931|gb|CB659206.1|CB659206
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|88338482|gb|CI645736.1|CI645736
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|29624993|gb|CB630004.1|CB630004
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGEST: gi|88732005|gb|CI757182.1|CI757182
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
EST: CCGGGTGGAGCCGTGTGATGCAGCGGCGCACCAGGAAGCGCATCGCTAAG GCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
genomic: CCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGgttcgtgttt ... ttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAG
ttttcgtggtcgaggttttgatttttgtttagtttttccgaaactttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGCTGTGCGGCGACAATTTCCCCGAGTGGATATCCTTCCCGCAGTATGAGC
ttttgat putative branch site (score: 4)
ctttttctac putative PPT
ttttgatttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgtttcgggtgcgcgtggtggtgatgcttcgcctggattgctccttgtttctgcgtataaggctagggtgatggtcgtttaattttcgtggtcgaggttttgatttttgtttagtttttccgaaactttttctacagGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGCTGTGCGGCGACAATTTCCCCGAGTGGATATCCTTCCCGCAGTATGAGC
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