Sequence
atgc intronic sequence ATGC exonic sequencegtgagatgaaagtattttgaacatttaatttcttctaacagattataaaatcctgaccatgattcctctcctttaattagGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os07g22640.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g22640.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G092129_T02 (Zea mays), 3'ss of exon 7
-----gtgagatgaaagtattttgaacatttaatttcttctaacagattataaa--atcctgaccatgattcctct-cctttaattagGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG
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gtatggtgactagacagtattttgaacattctagccctaccagca-actataaatcaatgtaaccatggttcttttgcctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
upper sequence: LOC_Os07g22640.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA03G02370.1 (Glycine max), 3'ss of exon 7
gtgagatgaaagtattttgaac-atttaatttcttctaacagattataaaat------cctgaccatgattcctctcctttaatt---agGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAAT---GTTGATACAAG
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gtgagttatttgttttatgtactgcatctttcccttggacagattttgaagtagcatttctaactctaatatttacccaccatttcacagGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAG
upper sequence: LOC_Os07g22640.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA07G09070.1 (Glycine max), 3'ss of exon 8
gtgagatgaaagtattttgaacatttaatttcttctaacagattataaaat------cctgaccatgattcctctcctttaatt---agGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAAT---GTTGATACAAG
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gtgagttacttgttttatgtactgcatctttcacttgacagtttttgaagtagcatttgtaacactaatatttacccaccattttacagGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29689584|gb|CB685859.1|CB685859EST: CTATTGGAGGAAGTCTGACCGCTGTTCCAGGACTCTCCGACATGATTGAT GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTT
genomic: CTATTGGAGGAAGTCTGACCGCTGTTCCAGGACTCTCCGACATGATTGATgtgagatgaa ... ctttaattagGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttcttctaacagattataaaatcctgaccatgattcctctcctttaattagGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG
ttcctctcctttaatt CT-rich tract
taacagattataaaat TA-rich tract