Sequence
atgc intronic sequence ATGC exonic sequence...tctaatttgctgttgattaatgattattagtaatgttgcatcgagaatcagcaatacaatttaaccaatggtactaatcttttgtaactgggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATAT
Basic information
species | Oryza sativa |
transcript | LOC_Os07g19560.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g19560.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AC185415.3_FGT005 (Zea mays), 3'ss of exon 1
tctaatttgctgttgattaatgattattagtaatgt-tgcatcgagaatcagcaatacaatttaaccaatggtactaatcttttgtaactgggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATAT-------
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----attttttgcattttatgccatgatgctatcgtgtatttttagaagca--agtcaaattgaatagatggtactactcttccataacttgg-tggtttgttac-agATGGCTGGGTATATGTCAAGAGGGCCCCAAAATGGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGACGAGAATATGTTGGCTGAATATTTTGGCA
upper sequence: LOC_Os07g19560.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AC233865.1_FGT006 (Zea mays), 3'ss of exon 1
tctaatttgctgttgattaatgattattagtaatgttgcatcgagaatcagcaatacaatttaaccaatggtactaatcttttgtaactgggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATAT-------
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----attgtctact--tcatacctctttagtattttttgaagcaagacaattagacaaaacgaatcaatggtactacttttccataatttggtggttttgttac-agATGGCTGGGTATATGTCAAGAGGGCCCCAAAATGGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGATGAAAATATGTTGGCTGAATATTTTGGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88396700|gb|CI620033.1|CI620033EST: GACGCTGATCTCCTTCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTG TTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTTGTTT
genomic: GACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGgtgagcatcc ... ggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTC-TGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcagcaatacaatttaaccaatggtactaatcttttgtaactgggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATAT
aatacaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaatttgctgttgattaatgattattagtaatgttgcatcgagaatcagcaatacaatttaaccaatggtactaatcttttgtaactgggactatcagTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG