1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaaatataactactcactgaaatatttgcattctttatattggttccttacctccaggccagtgctgcaaagttaaccaaagtttctgttcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTTTGGTCAGAGTTATTCAAGAAGCAAATTGACAAT
species | Oryza sativa |
transcript | LOC_Os07g19060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88581377|gb|CI698357.1|CI698357
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: GTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCCAC-AGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88329569|gb|CI650023.1|CI650023
genomic: GTCGCATCGAGGCCATCGGCTTCCAGGTCGGCC-ACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGCTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88578514|gb|CI687450.1|CI687450
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88388611|gb|CI683394.1|CI683394
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88572188|gb|CI663759.1|CI663759
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88296136|gb|CI667526.1|CI667526
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|86887581|gb|CI294215.1|CI294215
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTEST: gi|88573657|gb|CI665426.1|CI665426
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
EST: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAG ATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
genomic: CGTCGCATCGAGGCCATCGGCTTCCAGGTCGGCCACCAGCTCACCGAGAGgtaccacgca ... tcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATT
tccttacctccaggccagtgctgcaaagttaaccaaagtttctgttcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTTTGGTCAGAGTTATTCAAGAAGCAAATTGACAAT
tttctgttc CT-rich tract
aaagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaatataactactcactgaaatatttgcattctttatattggttccttacctccaggccagtgctgcaaagttaaccaaagtttctgttcaaaatcagATATACTATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTTTGGTCAGAGTTATTCAAGAAGCAAATTGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA