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...tttgcgagtgatcttgaatttgtcattattttgtcagcgaaaaaaaaaattctcatcagaaaatgatgaaaaacgtgtcccatttctgttttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCAACCTGAATCAG
species | Oryza sativa |
transcript | LOC_Os07g16970.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88735266|gb|CI758774.1|CI758774
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88408099|gb|CI601577.1|CI601577
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88735048|gb|CI758556.1|CI758556
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|29616692|gb|CB621704.1|CB621704
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88407824|gb|CI588853.1|CI588853
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88744533|gb|CI767893.1|CI767893
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|58692091|gb|CK080778.1|CK080778
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCEST: gi|88407852|gb|CI588881.1|CI588881
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAG GTGCTGGATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
genomic: GGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctcct ... ttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTC
aaaattctcatcagaaaatgatgaaaaacgtgtcccatttctgttttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCAACCTGAATCAG
tcccatttctgtttt CT-rich tract
aaaatgatgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcgagtgatcttgaatttgtcattattttgtcagcgaaaaaaaaaattctcatcagaaaatgatgaaaaacgtgtcccatttctgttttgtcaccagGTGCTGCATATGGACAGGAATGATTACTACGGTGGAGACTCCACATCGCTCAACCTGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - -tcttgaa
- - - - - - - - - - - - - - - - - -agcgaaa
- - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgaa