1 5' 3' | 2 5' 3' | 3 5' 3' |
gtggcggcgctgcccttcccccttgttcttcttccttgcatctgcttccctcccgttttgcttctaattgtatttctctttcgtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC
species | Oryza sativa |
transcript | LOC_Os07g12650.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|13806613|gb|AU181586.1|AU181586
genomic: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: CTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|88358899|gb|CI619403.1|CI619403
genomic: CTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|88357562|gb|CI623616.1|CI623616
genomic: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|88332492|gb|CI651652.1|CI651652
genomic: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|88339791|gb|CI649048.1|CI649048
genomic: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|218485304|gb|FG956287.1|FG956287
genomic: TCGCGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: CCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAEST: gi|427734|gb|D23869.1|D23869
genomic: CCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
EST: CGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAG ATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
genomic: CGAAAACCCTAACCCTCCTCCTCCTCCGCCGCCGCCGCTCTCCCAAGgtggcggcgc ... gtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGA
gcatctgcttccctcccgttttgcttctaattgtatttctctttcgtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC
ttctaat putative branch site (score: 2)
ttgtatttctctttcg CT-rich tract
ttctaattgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcggcgctgcccttcccccttgttcttcttccttgcatctgcttccctcccgttttgcttctaattgtatttctctttcgtttccgcagATCCCTCCCGTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA