1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctggtagtgttgggctgaagaggagagatctttgtggtctgtacattgcaatgcatttatattctgctctagcgatgattcctgacgttgtaatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
species | Oryza sativa |
transcript | LOC_Os07g12250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|325493082|gb|JG457606.1|JG457606
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88348866|gb|CI653910.1|CI653910
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|33670740|gb|CF298979.1|CF298979
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|24468910|gb|CA305859.1|CA305859
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: ACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATCGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88381633|gb|CI682300.1|CI682300
genomic: ACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88348364|gb|CI639023.1|CI639023
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88388417|gb|CI683189.1|CI683189
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88592045|gb|CI710122.1|CI710122
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88571275|gb|CI662648.1|CI662648
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|218483042|gb|FG956499.1|FG956499
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: CGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAA-ATGGTTCTCAAEST: gi|86898740|gb|CI296058.1|CI296058
genomic: CGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|3767629|gb|AU031656.1|AU031656
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|55441469|gb|CV734055.1|CV734055
genomic: GGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88763039|gb|CI772595.1|CI772595
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|163927854|gb|EG713502.1|EG713502
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|112787065|gb|EE591987.1|EE591987
genomic: GTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GACGCGGAGGCGCTAGGGTTTTGCCCGCTTCCCACAG GTAAGGAGGCATCGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88290337|gb|CI665126.1|CI665126
genomic: GACGCGGAGGCGCTAGGGTTTTG-CTGC-TCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88739146|gb|CI762654.1|CI762654
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAAEST: gi|88574546|gb|CI666315.1|CI666315
genomic: GGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
EST: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAG GTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
genomic: AGCGGAGGCGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGgtgagtcgag ... taatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
ttgcaatgcatttatattctgctctagcgatgattcctgacgttgtaatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
tcctgac putative branch site (score: 62)
atttatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggtagtgttgggctgaagaggagagatctttgtggtctgtacattgcaatgcatttatattctgctctagcgatgattcctgacgttgtaatttgcagGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -gctgaag
- - - - - - - - - - - - - - - - - - - ctgtaca
- - - - - - - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatt