1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggttgagaaaattgaggcacacaattacattttctactgtagggaaacttaccttgcgtaatatagaattaaccgtttctagtctttcccttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGCTTCCATTATGGAGCGTGCCGATGAGAATCTCCTTCCGGCAGTTTACAAG
species | Oryza sativa |
transcript | LOC_Os07g10820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGCACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAG AGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGCEST: gi|58671197|gb|CK059883.1|CK059883
genomic: AGGGCACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAGgtgcatatgc ... cttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: GGGCGACGCTCCGACCCCAGCTCCCCGATCACCCCGTCTTCAACCACAAG AGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGCEST: gi|163928947|gb|EG711959.1|EG711959
genomic: GGGC-ACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAGgtgcatatgc ... cttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: AGGGCACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAG AGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAGgtgcatatgc ... cttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
aaacttaccttgcgtaatatagaattaaccgtttctagtctttcccttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGCTTCCATTATGGAGCGTGCCGATGAGAATCTCCTTCCGGCAGTTTACAAG
aattaac putative branch site (score: 2)
ccgtttctagtctttc CT-rich tract
taatatagaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttgagaaaattgaggcacacaattacattttctactgtagggaaacttaccttgcgtaatatagaattaaccgtttctagtctttcccttcttgcagAGCAAAGAATATTTTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGCTTCCATTATGGAGCGTGCCGATGAGAATCTCCTTCCGGCAGTTTACAAG
- - -gagaaaat
- - - - - - - - - cacacaa
- - - - - - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - ccttgcg