1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aggttcattcagtagctttctacaggattacctgaatatgctgctgactgtgaaaggctgaaagcaattgaattggggatcttttttccgtgtgtggcagCTCCGAAAGGATTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAGCTGAAGGTGGCCATCATAGGGGCCGGCCTCGCCGGCATGTCCACCGCGGT
species | Oryza sativa |
transcript | LOC_Os07g10490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGTGCGGTGCTCGCTCGACAGCAACGTCTCCGACATTGGCTGTCAACG CTCCGAAAGTGATTTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAEST: gi|58588107|gb|CF986415.1|CF986415
genomic: GGGGTGCGGTGCTCGCTCGACAGCAACGTCTCCGACA-TGGCCGTCAACGgtgagggttt ... tgtgtggcagCTCCGAAAG-GA-TTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAA
EST: GGGGGTGCGGTGCTCGCTCGACAGCAACGTCTCCGACATGGCCGTCAACG CTCCGAAAGGATTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAGC
genomic: GGGGGTGCGGTGCTCGCTCGACAGCAACGTCTCCGACATGGCCGTCAACGgtgagggttt ... tgtgtggcagCTCCGAAAGGATTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAGC
gactgtgaaaggctgaaagcaattgaattggggatcttttttccgtgtgtggcagCTCCGAAAGGATTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAGCTGAAGGTGGCCATCATAGGGGCCGGCCTCGCCGGCATGTCCACCGCGGT
tgctgac putative branch site (score: 7)
tcttttttccgtgt putative PPT
aattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttcattcagtagctttctacaggattacctgaatatgctgctgactgtgaaaggctgaaagcaattgaattggggatcttttttccgtgtgtggcagCTCCGAAAGGATTGTTCCCGCCGGAGCCGGAGCACTACAGGGGGCCGAAGCTGAAGGTGGCCATCATAGGGGCCGGCCTCGCCGGCATGTCCACCGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -cagtagc
- - - - - - - - - - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa