1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caataccagctttacatcttgatgatgacccatgtcactattttttataagcataaaattatctcgatacctgtctgattctcttatatgtttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGTGGCAAGAGTTGAGGCTATTGAGGCTGCAGGGTCACGAGGCACAAATGT
species | Oryza sativa |
transcript | LOC_Os07g08880.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88736691|gb|CI760199.1|CI760199
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|3462559|gb|AF074797.1|AF074797
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|55434340|gb|CV730291.1|CV730291
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|58679044|gb|CK067731.1|CK067731
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|33822155|gb|CF336893.1|CF336893
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|218497932|gb|FG957265.1|FG957265
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|55432497|gb|CV729270.1|CV729270
genomic: GCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|325493451|gb|JG457975.1|JG457975
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88328018|gb|CI648425.1|CI648425
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88407773|gb|CI607907.1|CI607907
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88743386|gb|CI766894.1|CI766894
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88392298|gb|CI612772.1|CI612772
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88392287|gb|CI612761.1|CI612761
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88392479|gb|CI611745.1|CI611745
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|86910171|gb|CI292979.1|CI292979
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|58603106|gb|CK013634.1|CK013634
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGEST: gi|88760851|gb|CI770407.1|CI770407
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
tataagcataaaattatctcgatacctgtctgattctcttatatgtttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGTGGCAAGAGTTGAGGCTATTGAGGCTGCAGGGTCACGAGGCACAAATGT
gtctgat putative branch site (score: 4)
tgtttctt putative PPT
ataaaattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataccagctttacatcttgatgatgacccatgtcactattttttataagcataaaattatctcgatacctgtctgattctcttatatgtttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATGTGGCAAGAGTTGAGGCTATTGAGGCTGCAGGGTCACGAGGCACAAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG