1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtaataactctgttgtttttgctgatctattgtgaggggcttcaaggctccagctatgcagtcatgcatgtatttataccttttatttatttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATG
species | Oryza sativa |
transcript | LOC_Os07g08790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGGCCGACAGCAC TCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGEST: gi|58602031|gb|CK012559.1|CK012559
genomic: GGCGGCCGACAGCACgtaatgacga ... atttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTG
EST: CGGCGGCGAGGCGGCGGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCAC TCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGEST: gi|58669084|gb|CK057770.1|CK057770
genomic: CGGCGGCGAGGCGGC-GGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACgtaatgacga ... atttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTG
EST: GGCGAGGCGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCAC TCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTG
genomic: GGCGAGGCGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACgtaatgacga ... atttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTG
aaggctccagctatgcagtcatgcatgtatttataccttttatttatttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATG
ccttttatttattttt CT-rich tract
atgtatttataccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtaataactctgttgtttttgctgatctattgtgaggggcttcaaggctccagctatgcagtcatgcatgtatttataccttttatttatttttgcagTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - -ctgttgt
- - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - gctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt