1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcccggggagggggccatggcggcgccgcagcctcagcagccaccggcgccccggccaaaggtgcgggcgcggcgcgggcaggccaccgatccccacagTATCGCTGAGAGG
species | Oryza sativa |
transcript | LOC_Os07g08440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCGCGCCACCGCGCCACAG- TATCGCTGAGAGG
genomic: CCTCGCGCCACCGCGCCA-GGAgctcgcgccg ... atccccacagTATCGCTGAGAGG
cggcgccccggccaaaggtgcgggcgcggcgcgggcaggccaccgatccccacagTATCGCTGAGAGG
tccccac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcccggggagggggccatggcggcgccgcagcctcagcagccaccggcgccccggccaaaggtgcgggcgcggcgcgggcaggccaccgatccccacagTATCGCTGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - -ccatggc
- - - - - - - - - - - - - ccgcagc
- - - - - - - - - - - - - - - - - -cagcagc
- - - - - - - - - - - - - - - - - - - - - caccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - ccggcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaggc