1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ataatcagctattaataattcttagggctccctgtcggaagtccaaattcttatccactcttgtgtttcctatgctgatcttgtcgtatcacaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAAAGGGACAGAGTTGTGGAGTTTCAGACCAAGCTTGCCACAGCAAAAGCA
species | Oryza sativa |
transcript | LOC_Os07g06980.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88587229|gb|CI704965.1|CI704965
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88720048|gb|CI745138.1|CI745138
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88390145|gb|CI605598.1|CI605598
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAAAAGCCAAEST: gi|88468894|gb|CI696900.1|CI696900
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88590701|gb|CI707582.1|CI707582
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88301198|gb|CI594724.1|CI594724
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88718451|gb|CI741961.1|CI741961
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88693576|gb|CI737151.1|CI737151
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGNATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|86850055|gb|CI303508.1|CI303508
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88404447|gb|CI578324.1|CI578324
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: GCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCT-CAG ATTGGGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTAAACAGCCAAEST: gi|29681279|gb|CB677554.1|CB677554
genomic: GCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: GCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88336860|gb|CI626940.1|CI626940
genomic: GCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88587525|gb|CI705279.1|CI705279
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88432409|gb|CI565442.1|CI565442
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88367852|gb|CI570591.1|CI570591
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88721491|gb|CI744790.1|CI744790
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|117232793|gb|CT842287.1|CT842287
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88417010|gb|CI573725.1|CI573725
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88590249|gb|CI709087.1|CI709087
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88316146|gb|CI620424.1|CI620424
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|29644493|gb|CB649500.1|CB649500
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88312349|gb|CI582687.1|CI582687
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88432973|gb|CI690831.1|CI690831
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88577273|gb|CI673839.1|CI673839
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAEST: gi|88440911|gb|CI693488.1|CI693488
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
EST: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAG ATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
genomic: AAATCCAATCGCGAGAGGCGAGCGCCGCCGCCGCCGGGATCGCCCTCCAGgtacggccgc ... acaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAA
aattcttatccactcttgtgtttcctatgctgatcttgtcgtatcacaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAAAGGGACAGAGTTGTGGAGTTTCAGACCAAGCTTGCCACAGCAAAAGCA
tgctgat putative branch site (score: 17)
acaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatcagctattaataattcttagggctccctgtcggaagtccaaattcttatccactcttgtgtttcctatgctgatcttgtcgtatcacaattacagATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAAAGGGACAGAGTTGTGGAGTTTCAGACCAAGCTTGCCACAGCAAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - -ctccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat