1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taatttgcaatatgatttgcttggtgctcttgtcactctactttatttttcttttttttgcttttttatgtagtgatgtgttttatctttctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACA
species | Oryza sativa |
transcript | LOC_Os07g05050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAG AGGGCTGTCCTTGEST: gi|88390278|gb|CI605731.1|CI605731
genomic: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAGgtagccggct ... ctctgtccagAGGGCTGTCCTTG
EST: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAG AGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCAEST: gi|9865356|gb|AU101106.1|AU101106
genomic: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAGgtagccggct ... ctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCA
EST: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAG AGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACEST: gi|88665174|gb|CI707880.1|CI707880
genomic: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAGgtagccggct ... ctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGAC
EST: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAG AGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATEST: gi|86909323|gb|CI304618.1|CI304618
genomic: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAGgtagccggct ... ctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGAT
EST: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAG AGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCA
genomic: TCGTGGAGAGGCTCGCCGCACGGGGCATCACCAGGCTCTTCCCCATCCAGgtagccggct ... ctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCA
tttttcttttttttgcttttttatgtagtgatgtgttttatctttctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACA
ttttatctttctctgt CT-rich tract
ttttttttgctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttgcaatatgatttgcttggtgctcttgtcactctactttatttttcttttttttgcttttttatgtagtgatgtgttttatctttctctgtccagAGGGCTGTCCTTGATCCAGCAATGCAAGGCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- atttgca
- - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt