1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcttttcgccggctttggattttggaatttttttcccccttctccattccttcactatcctatcctggtcggtttcgcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAG
species | Oryza sativa |
transcript | LOC_Os07g01030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTTCGGGAGATGGGTGATGAG GTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAEST: gi|29615600|gb|CB620612.1|CB620612
genomic: AGTATCTTCGGGAGATGGGTGATGAGgtaagctttt ... gcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCA
EST: AGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAG GTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAEST: gi|29613025|gb|CB618038.1|CB618038
genomic: AGAACCGCTTCCTGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGgtaagctttt ... gcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCA
EST: AAGTATCTTCGGGAGATGGGTGATGAG GTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGACCTCTACGGAGCAEST: gi|29621512|gb|CB626523.1|CB626523
genomic: AAGTATCTTCGGGAGATGGGTGATGAGgtaagctttt ... gcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCA
EST: AGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAG GTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCA
genomic: AGAACCGCTTCCTGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGgtaagctttt ... gcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCA
tttcccccttctccattccttcactatcctatcctggtcggtttcgcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAG
tttcgcttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttttcgccggctttggattttggaatttttttcccccttctccattccttcactatcctatcctggtcggtttcgcttccacagGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA