1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaataatcaatctattctcatctccctttaacatctctattctatgttcacgccgtcgcagatctgttgattttcgccgccgcagattagattttgacttgatttttgttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCT
species | Oryza sativa |
transcript | LOC_Os06g51220.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29679537|gb|CB675812.1|CB675812
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58594868|gb|CF993176.1|CF993176
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58695034|gb|CK083721.1|CK083721
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33662445|gb|CF293412.1|CF293412
genomic: GGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCACCCATGAAGGGGGCCAAATCCAACGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29621856|gb|CB626867.1|CB626867
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58676420|gb|CK065107.1|CK065107
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29628654|gb|CB633665.1|CB633665
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: AGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29669077|gb|CB665352.1|CB665352
genomic: AGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29665838|gb|CB662113.1|CB662113
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58585904|gb|CF984212.1|CF984212
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGG-CAAATCCAAGGGCGCCGCCAAGCCGGAGGCCAA G-TGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|38471569|gb|CF955700.1|CF955700
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33663483|gb|CF294450.1|CF294450
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58593325|gb|CF991633.1|CF991633
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29664374|gb|CB660649.1|CB660649
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAEST: gi|33659807|gb|CF282420.1|CF282420
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTT-GGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGA
EST: AAGCCCGACGCCAA ATTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGTCAAGGGCAGGAAEST: gi|396941641|gb|HO188298.1|HO188298
genomic: AAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|218502608|gb|FG949724.1|FG949724
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAACGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29665805|gb|CB662080.1|CB662080
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29677199|gb|CB673474.1|CB673474
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29622248|gb|CB627259.1|CB627259
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58670107|gb|CK058793.1|CK058793
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: CGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGTGAEST: gi|29687336|gb|CB683611.1|CB683611
genomic: CGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAG-GA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAAGGCAGGAAEST: gi|33663024|gb|CF293991.1|CF293991
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|325493080|gb|JG457604.1|JG457604
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: CCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58675709|gb|CK064396.1|CK064396
genomic: CCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58598470|gb|CK008998.1|CK008998
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAA-GGCGCCGCCAAGCCCGACGCCAA GTGGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|218484316|gb|FG953183.1|FG953183
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: CCAATGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58587767|gb|CF986075.1|CF986075
genomic: CCAA-GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAG-CCGCGCGCCAAGGGCAGGAEST: gi|58696070|gb|CK084757.1|CK084757
genomic: GGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGC-CGCCAAGGGCAGGA
EST: CAAGGTGCGCCGCCAAGCCCTGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCTGGAGAAGCCCGCCGCCAAGGGCAGGEST: gi|163917754|gb|EG711288.1|EG711288
genomic: CAAGG-GCGCCGCCAAGCCC-GACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGC-GGAGAAGCCCGCCGCCAAGGGCAGG
EST: GCCCGACG-CAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|24208834|gb|AU225861.1|AU225861
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58692800|gb|CK081487.1|CK081487
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GGGG-CAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58668756|gb|CK057442.1|CK057442
genomic: GGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58680807|gb|CK069494.1|CK069494
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCG-CAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58695392|gb|CK084079.1|CK084079
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GGGCC-AATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29686955|gb|CB683230.1|CB683230
genomic: GGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: CGCCGCCAAGCCNGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33662765|gb|CF293732.1|CF293732
genomic: CGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|55408446|gb|CV720822.1|CV720822
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29641324|gb|CB646331.1|CB646331
genomic: GCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58696190|gb|CK084877.1|CK084877
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33655093|gb|CF277707.1|CF277707
genomic: GGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33666115|gb|CF297082.1|CF297082
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCC-AGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29669076|gb|CB665351.1|CB665351
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58688692|gb|CK077379.1|CK077379
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: AAGGGCGCCG-CAAGCCCGACGCCAA G-TGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCG-CGGCAAGGGCAGGAAEST: gi|58692927|gb|CK081614.1|CK081614
genomic: AAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCC-AATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|38474110|gb|CF958242.1|CF958242
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCCCGACGCC-A GTTGGGTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29643663|gb|CB648670.1|CB648670
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|4716467|gb|AU057583.1|AU057583
genomic: GCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33665955|gb|CF296922.1|CF296922
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29671952|gb|CB668227.1|CB668227
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29687600|gb|CB683875.1|CB683875
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAAT-CAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|58675087|gb|CK063774.1|CK063774
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29688721|gb|CB684996.1|CB684996
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: CATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29670694|gb|CB666969.1|CB666969
genomic: CATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33653508|gb|CF276122.1|CF276122
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29665837|gb|CB662112.1|CB662112
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|218499011|gb|FG954723.1|FG954723
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: GCGCCGCCAAGCCCGACGCCAA GTTTGGCTGT-AAGAGCT-AGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGEST: gi|29679536|gb|CB675811.1|CB675811
genomic: GCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagG-TTGGCTGTGAAGAG-TAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGG
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|218497459|gb|FG955185.1|FG955185
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAATGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|29665806|gb|CB662081.1|CB662081
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|38481706|gb|CF965788.1|CF965788
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAEST: gi|33664669|gb|CF295636.1|CF295636
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: TCAGCCATTAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
ctgttgattttcgccgccgcagattagattttgacttgatttttgttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCT
tttttgtt CT-rich tract
attagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatcaatctattctcatctccctttaacatctctattctatgttcacgccgtcgcagatctgttgattttcgccgccgcagattagattttgacttgatttttgttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG