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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcctttaaaatgcttccaaactaggcacatacaatggtcttgagttccattaataatccatacttctgtttcatatatgtatgcatgcttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAGCTCAGATGAAGCGGCCTCGAAGGCGTCTGTGGTGGGATGACTGATGAGG

Basic information

species Oryza sativa
transcript LOC_Os06g50380.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88363855|gb|CI607165.1|CI607165
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|58692527|gb|CK081214.1|CK081214
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|33653665|gb|CF276279.1|CF276279
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88412300|gb|CI573576.1|CI573576
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88430707|gb|CI596821.1|CI596821
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|58665528|gb|CK054214.1|CK054214
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGC-GCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|568842|gb|D39691.1|D39691
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88425185|gb|CI564702.1|CI564702
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|58660476|gb|CK049156.1|CK049156
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATTCGGCGTA
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACAT-CGGCGTA
EST: gi|58691081|gb|CK079768.1|CK079768
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|58662771|gb|CK051457.1|CK051457
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGACAAACATCGGCGTATCAACAAGTGACGCTGCATTTTCTTAGA
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGA-AAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGA
EST: gi|88314323|gb|CI604807.1|CI604807
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88415579|gb|CI589171.1|CI589171
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88454362|gb|CI569934.1|CI569934
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88396255|gb|CI598367.1|CI598367
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88717920|gb|CI739432.1|CI739432
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88367875|gb|CI570614.1|CI570614
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88343397|gb|CI621765.1|CI621765
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88389266|gb|CI598064.1|CI598064
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88716848|gb|CI740358.1|CI740358
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|87017089|gb|CI286225.1|CI286225
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88403864|gb|CI611519.1|CI611519
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88722233|gb|CI745743.1|CI745743
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88454349|gb|CI569921.1|CI569921
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88360478|gb|CI608404.1|CI608404
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88301008|gb|CI592188.1|CI592188
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88398167|gb|CI588055.1|CI588055
EST:     AAATCCCCTATACGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAAGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|33675570|gb|CF303809.1|CF303809
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88371119|gb|CI597596.1|CI597596
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88430181|gb|CI565194.1|CI565194
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88733262|gb|CI756439.1|CI756439
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88321518|gb|CI672646.1|CI672646
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88336983|gb|CI627063.1|CI627063
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88369286|gb|CI577749.1|CI577749
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88402401|gb|CI596262.1|CI596262
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88314516|gb|CI606584.1|CI606584
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|33661293|gb|CF292260.1|CF292260
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88432280|gb|CI565313.1|CI565313
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGT-CGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|33653808|gb|CF276422.1|CF276422
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|87015553|gb|CI303159.1|CI303159
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88316665|gb|CI622911.1|CI622911
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCGCGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88315421|gb|CI613690.1|CI613690
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATGGGTGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88717429|gb|CI740939.1|CI740939
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88406274|gb|CI596401.1|CI596401
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88364613|gb|CI612428.1|CI612428
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|24208150|gb|AU225177.1|AU225177
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
EST: gi|88407872|gb|CI588901.1|CI588901
EST:     AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAG                         AATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG
genomic: AAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 75 (downstream exon)
Score: 35

CGACGCCCAAATCGCGCGATTCGATCGAGGCAACCCTCCCCAATTCCCTCAAATCCCCTATCCGAAATCCGCCAATTGGCCGCGTCCGCCACGCCAAGAGgtgcgaattt ... ttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAGCTCAGATGAAGCGGCCTCGAAGGCGTCTGTGGTGGGATGACTGATGAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccattaataatccatacttctgtttcatatatgtatgcatgcttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAGCTCAGATGAAGCGGCCTCGAAGGCGTCTGTGGTGGGATGACTGATGAGG
    cattaat  putative branch site (score: 35)
                                          tgcttttttcc  putative PPT
     attaataatccata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatcctttaaaatgcttccaaactaggcacatacaatggtcttgagttccattaataatccatacttctgtttcatatatgtatgcatgcttttttccagAATAAAGGAAAACATCGGCGTATCAACAAGTGAAGCTGCATTTTCTTAGAGCTCAGATGAAGCGGCCTCGAAGGCGTCTGTGGTGGGATGACTGATGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG