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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggaaaaaaaacccgatccgcttaccctaccctcctcctccggtattttttcccctcacttccgcgactaattttcctcccttggtttggacacagATTGAGAGCAAGCAGCGTGGCGACGCCCAAATCGCGCGATTCGATCGAGGCAACCCTCCCCAATTCCCTCAAATCCCCTATCCGAAATCCGCCAATTGGC

Basic information

species Oryza sativa
transcript LOC_Os06g50380.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29633669|gb|CB638678.1|CB638678
EST:     GAGGCGGATTCGGGTCGGATCGGAGGCGG                         ATTGAGAGCAAGCAGCGTGGCGACGCCCAAATCGCGCGATTCGATCGAGGC
genomic: GAGGCGGATTCGGGTCGGATCGGAGGCGGgtagggaaaa ... ttggacacagATTGAGAGCAAGCAGCGTGGCGACGCCCAAATCGCGCGATTCGATCGAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtattttttcccctcacttccgcgactaattttcctcccttggtttggacacagATTGAGAGCAAGCAGCGTGGCGACGCCCAAATCGCGCGATTCGATCGAGGCAACCCTCCCCAATTCCCTCAAATCCCCTATCCGAAATCCGCCAATTGGC
                        gactaat  putative branch site (score: 2)
                              ttttcctcccttggtt  CT-rich tract
                         actaatttt  TA-rich tract