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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtcgatttcagccctggccgtgcttgatttccgccgattgtgtgggcaatctcgttttaatctcgtgcgtgtttttttacttacgattttgttttcgttttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGGGGCTCGCGCGATGGCTTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCT

Basic information

species Oryza sativa
transcript LOC_Os06g49810.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677587|gb|CF305826.1|CF305826
EST:     GATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCG                         TGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
genomic: GATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCGgtccgtcgat ... ttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
EST: gi|58609868|gb|CK037901.1|CK037901
EST:     ATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCG                         TGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
genomic: ATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCGgtccgtcgat ... ttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatctcgtgcgtgtttttttacttacgattttgttttcgttttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGGGGCTCGCGCGATGGCTTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCT
                       tacttac  putative branch site (score: 1)
                                ttttgttttcgtttt  putative PPT
               tgtttttttactta  TA-rich tract