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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttgttgctaactggaactagcagatatctccatcacgcatgttctcctctgtcctactttctgttcttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT

Basic information

species Oryza sativa
transcript LOC_Os06g48750.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G116034_T01 (Zea mays), 3'ss of exon 1
atcttgttgctaactggaactagcagatatctccatcacgcatgttctcctctgtcctactttctgttcttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT
     |||  | | |  | ||  |   | | |   |    ||| || ||  |     | || |   |||| |    |||||| || |||| || |  |||||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||
----ggttcatgattaaacctttctt-tgtatttgtttgtcatattgtcaaca--tgtgctgtaacttctgtgtattaacatgtt-tctt-ttgctgcagtcatggcagGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGATGCAGGAGCTGCT

upper sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G027995_T01 (Zea mays), 3'ss of exon 1
atcttgttgctaactggaactagcagatatctccat-cacgcatgttctcctctgtcctactttctgtt-cttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT
  | | ||  |         |     || |||   |    || ||   |  | | ||  |  | ||||  ||| ||  |   |   ||| |  || | ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
-acatctttttggtctaggttcatgaatttctttgtatttgcttgccataatgt-tcacaagtactgtaacttctgtgtcttaacatatttgtttgctacagTCATGGCAGGAATGGCACCCGAGGGTTCTCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTGCT

upper sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G116034_T02 (Zea mays), 3'ss of exon 1
----atcttgttgctaactggaactagcagatatctccatcacgcatgttctcctctgtcctactttctgttcttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT
    |||| | | |    |  |||       | | |   |    ||| || ||  |     | || |   |||| |    |||||| || |||| || |  |||||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||
tttgatctaggttcatgattaaacctttctttgtatttgtttgtcatattgtcaaca--tgtgctgtaacttctgtgtattaacatgtt-tctt-ttgctgcagTCATGGCAGGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGATGCAGGAGCTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687017|gb|CK075704.1|CK075704
EST:     TTCACCTCTCGCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29681409|gb|CB677684.1|CB677684
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58662423|gb|CK051109.1|CK051109
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58670875|gb|CK059561.1|CK059561
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58692318|gb|CK081005.1|CK081005
EST:     CCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: CCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29617450|gb|CB622462.1|CB622462
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|27554015|gb|CA997915.1|CA997915
EST:     GGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: GGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|88696339|gb|CI739914.1|CI739914
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29634490|gb|CB639499.1|CB639499
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29618198|gb|CB623210.1|CB623210
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58685069|gb|CK073756.1|CK073756
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACGGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29666501|gb|CB662776.1|CB662776
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACGGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58681442|gb|CK070129.1|CK070129
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58659178|gb|CK047858.1|CK047858
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCA-GGGGTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29681779|gb|CB678054.1|CB678054
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|56158541|gb|AU094758.2|AU094758
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCAC--TC
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58652969|gb|CK041649.1|CK041649
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTNGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29657788|gb|CB654063.1|CB654063
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29617425|gb|CB622437.1|CB622437
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|86891788|gb|CI310020.1|CI310020
EST:     CCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: CCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58596902|gb|CK007430.1|CK007430
EST:     TCGGCGTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TC-ACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29683861|gb|CB680136.1|CB680136
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29687377|gb|CB683652.1|CB683652
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58690915|gb|CK079602.1|CK079602
EST:     TCTCCCGCCTCCGG-CTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29657751|gb|CB654026.1|CB654026
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58660365|gb|CK049045.1|CK049045
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58677625|gb|CK066312.1|CK066312
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58662665|gb|CK051351.1|CK051351
EST:     CCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: CCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58608944|gb|CK036977.1|CK036977
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58657174|gb|CK045854.1|CK045854
EST:     TTCACCTCTCCCGGCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29664636|gb|CB660911.1|CB660911
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|218485882|gb|FG950582.1|FG950582
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|58686621|gb|CK075308.1|CK075308
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29666236|gb|CB662511.1|CB662511
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
EST: gi|29666235|gb|CB662510.1|CB662510
EST:     TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAG                         TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG
genomic: TTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 364

GCCGCCACCGCCGCCGCCGCCGCCGCCGAATCCGAGACCCCCATCTCGGATTCACCTCTCCCGCCTCCGGCCTCCGTCACCGTCTCCCCACGCGCGTCAGgtcgagatcc ... attaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctctgtcctactttctgttcttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT
                            ggctaac  putative branch site (score: 364)
                                         tcttatt  putative PPT
                               taacatattatcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcttgttgctaactggaactagcagatatctccatcacgcatgttctcctctgtcctactttctgttcttttggctaacatattatcttattaccacagTCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - tgttgct
- - - - - - - - - - - - - - - ctccatc