Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgatcttccgtttcgtcgtaaccctatctccgtctcgttctcccccgaaccctaacgccgtcgaggtttccttgtcagCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCG

Basic information

species Oryza sativa
transcript LOC_Os06g47830.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g47830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G018946_T01 (Zea mays), 3'ss of exon 1
----gttcgtgatcttccgtttcgtcgtaaccctatctccgtctcgttctcccccgaaccctaacgccgtcgaggtttcct-tgtcagCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCG---
    || ||  ||| ||  || | || | |||  || ||| ||||     || | ||| |||||| || |     | |||  |  ||| |||| ||||||||||||||||||| || | || ||||||| |  |||||  |||| ||||||||||||||   || |||   |||||  |||||||  |   
gtctgtccgcaatcctctattcc-tcatgaccg-atttccatctcccctcccgctgaatcctaaccccattcgcctctccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATCGCCCGCTCCTTCGCCGCCGC---CGACGCCACCGGTGATGGCGACCTTGTCA

upper sequence: LOC_Os06g47830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061485_T01 (Zea mays), 3'ss of exon 1
-----------------gttcgtgatcttccgtttcgtcgtaaccctatctccgtctcgttctcccccgaacc-ctaacgccgtc-gaggtttccttgtcagCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCG---
                  | || | |   ||    |  |    |||   |||  |||||     |||  || | ||||| ||||| |  | | |  |  ||| |||| |||||||||| ||||||||||   ||| ||||||||| ||||||  |||| ||||||||||||||    |  |||  | |||| |||||||| |   
acccaagaccgcatttactacgcggtacccccccccccccc--ccccccctctctctcgccgagccctaaatcgctaaccccgtccgccgctccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCGCCCGCTCCTTCGCCGCCGC---TGATGCGACCAGTGGTGGCGACCCTGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatctccgtctcgttctcccccgaaccctaacgccgtcgaggtttccttgtcagCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCG
                          ccctaac  putative branch site (score: 2)
                                           tttccttgtc  putative PPT