1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagcatgattcatgtcatatctcaaaagcagctgattattacattttatgtcattttcataagaaactctgacaagatatgcataaatttttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
species | Oryza sativa |
transcript | LOC_Os06g46930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCTTCTGGGGCCACCCGCTCTCCACCCTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88330769|gb|CI636777.1|CI636777
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|33815049|gb|CF333389.1|CF333389
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|38474567|gb|CF958700.1|CF958700
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|55412137|gb|CV724513.1|CV724513
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGGGGEST: gi|58594789|gb|CF993097.1|CF993097
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88352549|gb|CI654374.1|CI654374
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|56157658|gb|C25003.2|C25003
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88414886|gb|CI601718.1|CI601718
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|33801796|gb|CF326771.1|CF326771
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|86830951|gb|CI295472.1|CI295472
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|38477056|gb|CF961189.1|CF961189
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|3763301|gb|AU030053.1|AU030053
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88572695|gb|CI664266.1|CI664266
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|55413199|gb|CV725575.1|CV725575
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: TCTTCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88370230|gb|CI585235.1|CI585235
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|163920604|gb|EG710655.1|EG710655
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88312960|gb|CI592244.1|CI592244
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGEST: gi|88348216|gb|CI637677.1|CI637677
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
EST: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGG GTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
genomic: GCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGgtttgtgccg ... ttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
ttatgtcattttcataagaaactctgacaagatatgcataaatttttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
ctctgac putative branch site (score: 47)
tttttat putative PPT
aagatatgcataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcatgattcatgtcatatctcaaaagcagctgattattacattttatgtcattttcataagaaactctgacaagatatgcataaatttttatatgcagGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGG
- - -tgattca
- - - - - - - - - - ctcaaaa
- - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcata