1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctccactgggtgtcatattctcggtacttaagcaactgagacggtgccattgcaaagcgtacctataaataagtccacactcttgcattgtctttgcagCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACA
species | Oryza sativa |
transcript | LOC_Os06g46310.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCG CTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAEST: gi|44677020|gb|CR290454.1|CR290454
genomic: GTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGgtaacttctc ... gtctttgcagCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCA
EST: GTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAANCCGANCACCG CTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCA
genomic: GTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGgtaacttctc ... gtctttgcagCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCA
tgccattgcaaagcgtacctataaataagtccacactcttgcattgtctttgcagCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACA
ttgtcttt CT-rich tract
tataaataagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccactgggtgtcatattctcggtacttaagcaactgagacggtgccattgcaaagcgtacctataaataagtccacactcttgcattgtctttgcagCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACA
- - - ctgggtg
- - - - - - - - - - - - - - - - gcaactg
- - - - - - - - - - - - - - - - - - - - - - - - cattgca