Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29658101|gb|CB654376.1|CB654376EST: AGGGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAG GTGGACGGGGAGAACCCGAACCTGTACTTCACGAGGGAGGACGTGGTGCTG
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAGgtgagctcta ... tttggtgcagGTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTG
EST:
gi|29670756|gb|CB667031.1|CB667031EST: AGGGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAG GTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTG
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAGgtgagctcta ... tttggtgcagGTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTG
EST:
gi|86498344|gb|CI140977.1|CI140977EST: GGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAG GTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTG
genomic: GGCGTCATGCTCACCCACCGCAGCCTCGTCACCAGCGTCGCGCAGCAGgtgagctcta ... tttggtgcagGTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagagagtaacttactagtactaataatgttgaaaattgtgaaatttggtgcagGTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTGTGCTTGCTGCCGCTGTTCCACATCTACTCGCTCAACTCCGTGCTGCTGG
tactaat putative branch site (score: 1)
taataatgttgaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgatctaaatgatagtaaaataatctcttttttttttcaacctactagagagtaacttactagtactaataatgttgaaaattgtgaaatttggtgcagGTGGACGGGGAGAACCCGAACCTGTACTTCAGGAGGGAGGACGTGGTGCTGTGCTTGCTGCCGCTGTTCCACATCTACTCGCTCAACTCCGTGCTGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT