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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccccgagagtttttttcctcgctcaattccgaatccgaatttggcggcggcggcgtctcacctgtgtggctttcctgtgtttttctttctttttttggggtgttttgtccatccgtcatcagTCACTGGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATCCCTACGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTG

Basic information

species Oryza sativa
transcript LOC_Os06g43190.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g43190.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G704277_T02 (Zea mays), 3'ss of exon 1
gtgaccccgagagtttttttcctcgctcaattccgaatccgaatttggcggcggcggcgtctcacctgtgtggctttcctgtgtttttctttctttttttggggtgttttgtccatccgtcatcagTCACTGGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATCCCTACGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTG
                              | ||    |||  |    |  |  ||     || ||   ||  ||       | |  ||  ||| |  |          |||    | | |  ||||||| |||||| |||||||| ||||||||||||||||||| || ||||| |||||||||  | ||||||| ||||||| |||| ||||||| ||||||||
-----------------------------gtgccttgcccgcctccctcctccccgatccttctccctcgtacctactggtagctgatcgatctctcctc--------ctgtaaccctgcctgcagTCACCGGGTGCCGGAAGCTGCGGGACACGGAGTTCTTCACCCGCCAGGACCCCTACGTCGTCGTCGAGTACGCCACCACCAAGCTCCGCACTCGCACCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40488146|gb|BX898747.1|BX898747
EST:     GCGCCCGTAGCCATCCATGTCGATACAAGGCCAGATCCTCGAAGTCAGAG                         TCACTGGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATC
genomic: GCGCCCGTAGCCATCCATGTCGATACAAGGCCAGATCCTCGAAGTCAGAGgtgaccccga ... ccgtcatcagTCACTGGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctttcctgtgtttttctttctttttttggggtgttttgtccatccgtcatcagTCACTGGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATCCCTACGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTG
                                        tccatcc  CT-rich tract
            tttttctttctttttt  TA-rich tract