1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcgtatctgttcccttcctcctcctcctccgtttcatcatgaattgtctcgattgatccccgagctgtgtgtgtgtgtgttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT
species | Oryza sativa |
transcript | LOC_Os06g35540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCEST: gi|58607841|gb|CK035874.1|CK035874
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCEST: gi|13807574|gb|AU181996.1|AU181996
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCEST: gi|88406564|gb|CI599057.1|CI599057
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCEST: gi|88392405|gb|CI612879.1|CI612879
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCEST: gi|88403459|gb|CI573182.1|CI573182
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
EST: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTC GGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
genomic: CCGAGGCGTTCCTCGCCGACCCCTCCCCGGACAAAGTCAACGTCGGCGTCgtgcgtatct ... ttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGC
catcatgaattgtctcgattgatccccgagctgtgtgtgtgtgtgttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT
gattgat putative branch site (score: 22)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtatctgttcccttcctcctcctcctccgtttcatcatgaattgtctcgattgatccccgagctgtgtgtgtgtgtgttcgccgcagGGCGCGTACCGGGACGACAGCGGGAAGCCCGTGGTGCTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA