1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttcatgagcttgattgtttgtttaagtttcttctggttgctgatcattatattgcctatgtcttgccctatcttatggttcgtttccatgtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTTCAACTACTATTGGAGGGAAGAACGATGAGCCCAAAAGG
species | Oryza sativa |
transcript | LOC_Os06g35530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG GGTGGTCCCACTATAATGGGAGGCAATGATCCAGTCACAGGTCATATAATTEST: gi|66914786|gb|CX101634.1|CX101634
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|33793859|gb|CF322817.1|CF322817
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|58608373|gb|CK036406.1|CK036406
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGGGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|29672896|gb|CB669171.1|CB669171
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|33676536|gb|CF304775.1|CF304775
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|58653237|gb|CK041917.1|CK041917
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: CGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGNGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATEST: gi|29689142|gb|CB685417.1|CB685417
genomic: CGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAG-GAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAAT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTEST: gi|29660849|gb|CB657124.1|CB657124
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
EST: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAG CATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
genomic: TCGACGCGATGCAGGTCGACGACCCGCCGCGTGCGTCCGCCGAGGAGAAGgtgagcgttc ... gtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATT
cattatattgcctatgtcttgccctatcttatggttcgtttccatgtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTTCAACTACTATTGGAGGGAAGAACGATGAGCCCAAAAGG
tatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatgagcttgattgtttgtttaagtttcttctggttgctgatcattatattgcctatgtcttgccctatcttatggttcgtttccatgtcatggcagCATGGTCCCACTATAATGGGAGGAAATGATCCAGTCACAGGTCATATAATTTCAACTACTATTGGAGGGAAGAACGATGAGCCCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -catgagc
- - - - - - - -tgtttgt
- - - - - - - - - - - - - - - cttctgg
- - - - - - - - - - - - - - - - - - - tgctgat