Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgcaaaactgaaacatttaaaatattttctgcttgagctaataaacttctgtatgccacatatatttatgtgttggtctatttaatgcagCTCTCGGGGCCAAAACCTTAAGACAAGCACTTACGCATGGGAGAATCTGTTTGCACTTTTTGTCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATT

Basic information

species Oryza sativa
transcript LOC_Os06g33610.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58601665|gb|CK012193.1|CK012193
EST:     TGGGGTCTG-AAAATCTTAG                         CTCTCGGGGCCAAAACCTTAAGACAAGCACTGAGGCATGGGAGAATCTGTT
genomic: TGGGGTCTGCAAAATCTTAGgtccgtgcaa ... tttaatgcagCTCTCGGGGCCAAAACCTTAAGACAAGCACTTACGCATGGGAGAATCTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctaataaacttctgtatgccacatatatttatgtgttggtctatttaatgcagCTCTCGGGGCCAAAACCTTAAGACAAGCACTTACGCATGGGAGAATCTGTTTGCACTTTTTGTCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATT
                                         tctattt  CT-rich tract
                        atatatttatgtgtt  TA-rich tract