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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatcccaactcctgctttgccgcattcttccatgctagggcgatctccgattggggaggtactaacctcttttttcctgccatttttgtctcctgtcagGATTTTGGGCAAAGGTGGGGGTGAATTTGCACGAGGGTTTTGGTTGATGGCGAACATTCGGGCTCTTCTCATCGG

Basic information

species Oryza sativa
transcript LOC_Os06g30460.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86832137|gb|CI305363.1|CI305363
EST:     GGCGGCGATCTCCATCTGGCGAGCAGCGGAGGGGAGGGATCCTGATCCTG                         GATTTTGGGCAAAGGTGGGGGTGAATTTGCACGAGGGTTTTGGTTGATGGC
genomic: GGCGGCGATCTCCATCTGGCGAGCAGCGGAGGGGAGGGATCCTGATCCTGgtgcgtcctc ... ctcctgtcagGATTTTGGGCAAAGGTGGGGGTGAATTTGCACGAGGGTTTTGGTTGATGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgattggggaggtactaacctcttttttcctgccatttttgtctcctgtcagGATTTTGGGCAAAGGTGGGGGTGAATTTGCACGAGGGTTTTGGTTGATGGCGAACATTCGGGCTCTTCTCATCGG
               tactaac  putative branch site (score: 0)
                     cctcttttttcctgcc  CT-rich tract
                       tctttttt  TA-rich tract