Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatctcttctgtgatgtgaatttcggtgtctgaacaaatctcagttgctgcaactctgaagaatggtataccttttggttttccctctctgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAGTACGCCGACAAGAATCCCAACTTCGTCGGCTGCGTGGAGGGCGCTCTCG

Basic information

species Oryza sativa
transcript LOC_Os06g29180.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G049811_T01 (Zea mays), 3'ss of exon 1
tgatctcttctgtgatgtgaatttcggtgtctgaacaaatctcagttgctgcaactctgaagaatggtataccttttggtt---ttccctctctgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAGTACGCCGACAAGAATCCCAACTTCGTCGGCTGCGTGGAGGGCGCTCTCG
|| |     |||  ||   |  | ||| |       |  | ||  |  |   |||| ||||||   | || |   ||  ||   |||   || ||    |||||| ||  |||||||||||||||| || || ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||| ||||| || ||||
tgcttgtgcctg-aattccagatgcggagcaatccgatctatctatgacacaaactttgaaga--tgcattctcattaattgaattcttcctttgttctgcagACGTCTACAGGCAGCAAGAAGATAGTCGGGGTGTTCTACAAGGCCGGGGAGTATGCCGACAAGAACCCCAACTTCGTCGGCTGCGTCGAGGGTGCACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88407681|gb|CI607815.1|CI607815
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|33658449|gb|CF281062.1|CF281062
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88362043|gb|CI607043.1|CI607043
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTGCAAGGGCGGAGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88825622|gb|CI776187.1|CI776187
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29669366|gb|CB665641.1|CB665641
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88762502|gb|CI772058.1|CI772058
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88727625|gb|CI751280.1|CI751280
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88425288|gb|CI564805.1|CI564805
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29659275|gb|CB655550.1|CB655550
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|568232|gb|D39068.1|D39068
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGNGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88397850|gb|CI583168.1|CI583168
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88388321|gb|CI627860.1|CI627860
EST:     CGGGGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGAAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|86906155|gb|CI290088.1|CI290088
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29658972|gb|CB655247.1|CB655247
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGA-
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88430317|gb|CI567336.1|CI567336
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88445083|gb|CI589561.1|CI589561
EST:     CGGGGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88827359|gb|CI777924.1|CI777924
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88415236|gb|CI584059.1|CI584059
EST:     CGGGGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88430290|gb|CI567309.1|CI567309
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|66915088|gb|CX101936.1|CX101936
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88370984|gb|CI595096.1|CI595096
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88456150|gb|CI567790.1|CI567790
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88723458|gb|CI746968.1|CI746968
EST:     GGCGGCGGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: GGCGGC-GGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88385973|gb|CI568641.1|CI568641
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|163929128|gb|EG712653.1|EG712653
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88355780|gb|CI626221.1|CI626221
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29666819|gb|CB663094.1|CB663094
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88826949|gb|CI777514.1|CI777514
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|87024155|gb|CI291808.1|CI291808
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29662258|gb|CB658533.1|CB658533
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88367681|gb|CI568453.1|CI568453
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88427411|gb|CI569449.1|CI569449
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|218480965|gb|FG963100.1|FG963100
EST:     CGGCGGCGGGGCATCGTCGCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88824989|gb|CI775554.1|CI775554
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88324583|gb|CI568202.1|CI568202
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88363140|gb|CI616297.1|CI616297
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88371347|gb|CI600195.1|CI600195
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88343604|gb|CI622979.1|CI622979
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88317277|gb|CI627926.1|CI627926
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88345652|gb|CI629913.1|CI629913
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88745628|gb|CI768988.1|CI768988
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29663025|gb|CB659300.1|CB659300
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|29646499|gb|CB651506.1|CB651506
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88393808|gb|CI621303.1|CI621303
EST:     CGGGGGCGGGGCATCTTCTCGACCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|58687762|gb|CK076449.1|CK076449
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88343194|gb|CI627154.1|CI627154
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88402450|gb|CI596311.1|CI596311
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88364952|gb|CI616371.1|CI616371
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|702416|gb|D48707.1|D48707
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88300439|gb|CI584858.1|CI584858
EST:     GGCGGCGGGGCCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: GGCGGCGGGG-CATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|86905798|gb|CI290932.1|CI290932
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
EST: gi|88390489|gb|CI607525.1|CI607525
EST:     CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCAC                         ACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG
genomic: CGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 62 (upstream exon), 73 (downstream exon)
Score: 42

TCGTCTCGCGATTTCTCCTCCTCCTCCTGGGATCATGGCGATGTGGAGGGCGGCGGCGGGGCATCTTCTCGGCCGCGCGCTCGGCTCCAGGGCCGCGCACgtacgtactt ... tgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAGTACGCCGACAAGAATCCCAACTTCGTCGGCTGCGTGGAGGGCGCTCTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgcaactctgaagaatggtataccttttggttttccctctctgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAGTACGCCGACAAGAATCCCAACTTCGTCGGCTGCGTGGAGGGCGCTCTCG
                        taccttttggttttcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgatctcttctgtgatgtgaatttcggtgtctgaacaaatctcagttgctgcaactctgaagaatggtataccttttggttttccctctctgaatcgcagACATCAGCAGGCAGCAAGAAGATCGTGGGTGTGTTCTACAAGGGCGGCGAGTACGCCGACAAGAATCCCAACTTCGTCGGCTGCGTGGAGGGCGCTCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - tgtgatg
- - - - - - - - - - - - - gtgtctg
- - - - - - - - - - - - - - - - -aacaaat
- - - - - - - - - - - - - - - - - - - - - - - tgctgca