1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttccagacatatttggaactcttttacatactagcttgcaattgagaattgtctatttattggaagcactgttgtaattgagatttatacttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACCTTCCAGTGAATTATTCAGCTGCAGATAAAGTGAAATCTCAGAAATTGG
species | Oryza sativa |
transcript | LOC_Os06g24594.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATG TTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACEST: gi|33678433|gb|CF306672.1|CF306672
genomic: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATGgtgggatttt ... acttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGAC
EST: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATG TTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACEST: gi|88305858|gb|CI633438.1|CI633438
genomic: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATGgtgggatttt ... acttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGAC
EST: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATG TTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACEST: gi|88692304|gb|CI735879.1|CI735879
genomic: GCCCATGGAAGCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATGgtgggatttt ... acttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGAC
EST: CCCATGGAAGCCCCACGTGCCTGTACTACACCCAGGGGAAATGCACCATG TTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGAC
genomic: CCCATGGAAGCCC-ACGTGCCTGTACTACACCCAGGGGAAATGCACCATGgtgggatttt ... acttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGAC
gagaattgtctatttattggaagcactgttgtaattgagatttatacttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACCTTCCAGTGAATTATTCAGCTGCAGATAAAGTGAAATCTCAGAAATTGG
tacttcttc CT-rich tract
taattgagatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccagacatatttggaactcttttacatactagcttgcaattgagaattgtctatttattggaagcactgttgtaattgagatttatacttcttcagTTGAATGATACTTTGCATCTTGAGAAATTCAATCACAATCTGCCAACAGACCTTCCAGTGAATTATTCAGCTGCAGATAAAGTGAAATCTCAGAAATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT