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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataataggccgccgccgccgttggagccgccgcgatccgcccgcccgctcgctcgctcgctcgtgcgctcccccgatctgatccagttctgatctgcttcgtgcagGGGGCGGGCAAGTCGGCCGTGCTGAACAGCCTCATCGGCCACCCCGTGCTG

Basic information

species Oryza sativa
transcript LOC_Os06g13820.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13820.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G157462_T01 (Zea mays), 3'ss of exon 1
gtaagtat-aataggccgccgccgccg-----ttggagccgccgcgatccgcccgc-ccgctcgctcgct-cgctcgtgcgc---tcccccgatctgatccagttctgatctgctt---cgtgcagGGGGCGGGCAAGTCGGCCGTGCTGAACAGCCTCATCGGCCACCCCGTGCTG
|| |||||   |   ||||||    |       | || ||  ||||||| || |   | ||| ||  ||  | ||  ||| |   |  ||||||||||||   ||| |||| | ||   | || |||| || |||||||||||||||||||||||||||||||||||||| ||  ||
gtgagtatcggtcctccgccgttctcagcacactagacccctcgcgatctgctcctgctgctagcgtgccgcactactgctcgtgtgacccgatctgatctt-ttccgatccgtttgttcatgtagGGCGCTGGCAAGTCGGCCGTGCTGAACAGCCTCATCGGCCACCCGGTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgctcgctcgtgcgctcccccgatctgatccagttctgatctgcttcgtgcagGGGGCGGGCAAGTCGGCCGTGCTGAACAGCCTCATCGGCCACCCCGTGCTG
                                   ttctgat  putative branch site (score: 3)
                                         tctgcttc  CT-rich tract