1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattaaattgcaaagatttgcctgtcaatttattgtttaataattcaagaagttagctttcttatgttatttgataattaatataacctttccatttcagCAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAGAGTTTGGATCTTTGCCTGCACTTCAAGATGCTGTGACTGTTGTTGGTTA
species | Oryza sativa |
transcript | LOC_Os06g12780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTG CAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAGEST: gi|33794406|gb|CF323087.1|CF323087
genomic: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTGgtatgtatag ... tccatttcagCAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAG
EST: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTG CAATGTTAACTGTAGAGGATGATGAATNTCTGGAAAGGGGTTTCACCCCTAEST: gi|29614270|gb|CB619283.1|CB619283
genomic: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTGgtatgtatag ... tccatttcagCAATGTTAACTGTAGAGGATGATGAAT-TCTGGAAAGGGGTTTCACCCCTA
EST: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTG CAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAG
genomic: TACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTGgtatgtatag ... tccatttcagCAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAG
caagaagttagctttcttatgttatttgataattaatataacctttccatttcagCAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAGAGTTTGGATCTTTGCCTGCACTTCAAGATGCTGTGACTGTTGTTGGTTA
atataac putative branch site (score: 8)
cctttccatttc CT-rich tract
ttagctttcttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaaattgcaaagatttgcctgtcaatttattgtttaataattcaagaagttagctttcttatgttatttgataattaatataacctttccatttcagCAATGTTAACTGTAGAGGATGATGAATTCTGGAAAGGGGTTTCACCCCTAGAGTTTGGATCTTTGCCTGCACTTCAAGATGCTGTGACTGTTGTTGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -aattgca
- - - - - - - - -ttgcctg