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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttacagctgagaatttagttgcgttgcaaattttttatgtactaacatgttgaaaaaggttccatcattctgagttgaatttgctatgtttgtcacagGTCCTTTCACACAGAGAGTGTTGTTGACAATAGAGGAGAAGCATCTTCCGTATGATATAAAACTAGTTGATCTCGCTAACAAACCTGATTG

Basic information

species Oryza sativa
transcript LOC_Os06g12630.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g12630.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G826194_T02 (Zea mays), 3'ss of exon 1
---ttttacagctgagaattt--agttgcgttgcaaattttttatgtactaacatgttgaaaaaggttccatcattctgagttgaatttgctatgtttgtcacagGTCCTTTCACACAGAGAGTGTTGTTGACAATAGAGGAGAAGCATCTTCCGTATGATATAAAACTAGTTGATCTCGCTAACAAACCTGATTG
       |||| | |   |||  |  ||| |  ||| |||||| ||  || |  | |||||| |        || ||||| || |||||   ||||| | ||||||||||||||||||||| || |||||||| ||||||||||||||||| || |||||| | || ||||||||||| ||||| || || |||||
taacaccacagtttaaggtttttaactgcatcacaagtttttt-tgctctgat-tattgaaata---cttgacagtctgaattaaatttcacatgttggccacagGTCCTTTCACACAGAGGGTTTTGTTGACTATAGAGGAGAAGCATCTGCCTTATGATCTGAAGCTAGTTGATCTAGCTAATAAGCCAGATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgttgaaaaaggttccatcattctgagttgaatttgctatgtttgtcacagGTCCTTTCACACAGAGAGTGTTGTTGACAATAGAGGAGAAGCATCTTCCGTATGATATAAAACTAGTTGATCTCGCTAACAAACCTGATTG
 tactaac  putative branch site (score: 0)
      ttgaaaaa  TA-rich tract