1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...gcgaacaaatctgtgcagattgtgctgttctagaatccatttgctgttgcaggcttgcagtttgtgatctgtgttctaatgtggctgtatttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACTGTACGATTGGGCCGGCGGCGACTACTGCTCGTGGCGCGGCGTCCTCTG
species | Oryza sativa |
transcript | LOC_Os06g10230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATG GGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACEST: gi|88290412|gb|CI665201.1|CI665201
genomic: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATGgtgggtggat ... ttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
EST: CCGNGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATG GGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACEST: gi|88341735|gb|CI642879.1|CI642879
genomic: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATGgtgggtggat ... ttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
EST: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATG GGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACEST: gi|88362140|gb|CI607140.1|CI607140
genomic: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATGgtgggtggat ... ttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
EST: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATG GGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACEST: gi|88341169|gb|CI639926.1|CI639926
genomic: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATGgtgggtggat ... ttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
EST: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATG GGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
genomic: CCGCGCTCTCGTCGCGCTCCTGCTCGTCGCCGTCGCCGTTGCCGATGATGgtgggtggat ... ttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTAC
gttgcaggcttgcagtttgtgatctgtgttctaatgtggctgtatttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACTGTACGATTGGGCCGGCGGCGACTACTGCTCGTGGCGCGGCGTCCTCTG
ttctaat putative branch site (score: 4)
ttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgaacaaatctgtgcagattgtgctgttctagaatccatttgctgttgcaggcttgcagtttgtgatctgtgttctaatgtggctgtatttgcattcagGGTCGACGCTGCTGGAGATCAAGAAGTCCTTCCGCAATGTGGACAACGTACTGTACGATTGGGCCGGCGGCGACTACTGCTCGTGGCGCGGCGTCCTCTG
- gaacaaa
- - - - - - -tgcagat
- - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - -tgcaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggctg