1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaggctctccgtgtggattggatttgattggattgtgttgatgcgattggtttcgatgcgattctgatggttttgtttcggttttgggtggtcggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAGTGGC
species | Oryza sativa |
transcript | LOC_Os06g09330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAG GAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAGEST: gi|7134934|gb|AU082746.1|AU082746
genomic: GCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAGgtgaggctct ... cggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAG
EST: AGAAGGGATGCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAG GAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAGEST: gi|218494998|gb|FG948724.1|FG948724
genomic: AGAAGGGATGCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAGgtgaggctct ... cggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAG
EST: AGAAGGGATGCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAG GAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAG
genomic: AGAAGGGATGCCTCAAGCGCCTCCAGAAGGAGTACCACTCGCTCTGCAAGgtgaggctct ... cggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAG
tggtttcgatgcgattctgatggttttgtttcggttttgggtggtcggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAGTGGC
ttctgat putative branch site (score: 88)
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctctccgtgtggattggatttgattggattgtgttgatgcgattggtttcgatgcgattctgatggttttgtttcggttttgggtggtcggattgcagGAGCCGCCGCCGCAGATCGTGGCTCGCCCGCTGCCCAACGACATATTGGAGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG