1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacaatgttaattgatgccatatgactataggacacattatattgcgtttctgaatataccacctcatgaaactcataattttgttgattaattgttcagGTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAAATCAGTCATGGCTGGTTCTCTTGCGGCGTCTGCATTCTTCCCTGTCCCA
species | Oryza sativa |
transcript | LOC_Os06g05130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTGGGCGCGTCTCGTGGAGTATCCG GTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAAEST: gi|33676851|gb|CF305090.1|CF305090
genomic: GATTTGGGCGCGTCTCGTGGAGTATCCGgtgagttctt ... aattgttcagGTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAA
EST: GGGCGCGTCTCGTGGAGTATCCG GTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAA
genomic: GGGCGCGTCTCGTGGAGTATCCGgtgagttctt ... aattgttcagGTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAA
cgtttctgaatataccacctcatgaaactcataattttgttgattaattgttcagGTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAAATCAGTCATGGCTGGTTCTCTTGCGGCGTCTGCATTCTTCCCTGTCCCA
gattaat putative branch site (score: 4)
ataattttgttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaatgttaattgatgccatatgactataggacacattatattgcgtttctgaatataccacctcatgaaactcataattttgttgattaattgttcagGTTGCCCCTTCTAGTGTGTAACTTGGAGCAAATTTGGACCCTGAGACGCAAATCAGTCATGGCTGGTTCTCTTGCGGCGTCTGCATTCTTCCCTGTCCCA
- caatgtt
- - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga