1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacattccctcccgaactccggcccgatcccggcaggtggtgaggcggcgatttgacggggcggtctgtctgtctgtctgtctctgtcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAG
species | Oryza sativa |
transcript | LOC_Os06g05080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATCGNCGNCGGCGTCCTTTCCCCGTGCTCTCTTCTTCTCCACGCTCG ATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGEST: gi|58600462|gb|CK010990.1|CK010990
genomic: GCGATCGGCGGCGGCGTCC-TTCCCCGTGCTCTCTTCTTCTCCACGCTCGgtaacattcc ... tcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCG
EST: GGCGATCGGCGGCGGCGTTCTTCCCCGTGCTCTCTTCTTCTCCACGCTCG ATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGEST: gi|86822729|gb|CI251809.1|CI251809
genomic: GGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGgtaacattcc ... tcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCG
EST: GGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCCCG ATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCG
genomic: GGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGgtaacattcc ... tcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCG
gaggcggcgatttgacggggcggtctgtctgtctgtctgtctctgtcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAG
atttgac putative branch site (score: 74)
tctgtctctgtccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattccctcccgaactccggcccgatcccggcaggtggtgaggcggcgatttgacggggcggtctgtctgtctgtctgtctctgtcccgcgcagATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC