1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggagtggtatactggtattaatactttgcagggcctccttctaaactaactttgttggtgttttatgagctaagatgattgacatttttgagtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCTGGGCAAGTCATGATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTG
species | Oryza sativa |
transcript | LOC_Os06g04650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCCCGCCCTGAGTACCGCAACNTCGGCGACCACGCCGAGTGCNTCAAG GTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCEST: gi|89167247|gb|CI252778.1|CI252778
genomic: GG-CCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAGgtgcggtgcg ... agtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTC
EST: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAG GTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCEST: gi|27577735|gb|CB000430.1|CB000430
genomic: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAGgtgcggtgcg ... agtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTC
EST: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAG GTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCEST: gi|38470045|gb|CF954176.1|CF954176
genomic: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAGgtgcggtgcg ... agtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTC
EST: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAG GTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTC
genomic: AGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAGgtgcggtgcg ... agtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTC
ctaactttgttggtgttttatgagctaagatgattgacatttttgagtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCTGGGCAAGTCATGATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTG
gattgac putative branch site (score: 36)
tgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagtggtatactggtattaatactttgcagggcctccttctaaactaactttgttggtgttttatgagctaagatgattgacatttttgagtcatttagGTTGAATATGATCCCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCTGGGCAAGTCATGATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatt