1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaagctcgctcctcccaccccccacctcttctctgttcctcgtgtttatctatgtctgtatcatctgatcgctgatgccgcgcgaatcgatcgcttgctgctcttctcacagGTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCTCATGGAAG
species | Oryza sativa |
transcript | LOC_Os06g04450.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATC GTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCTEST: gi|88314456|gb|CI604940.1|CI604940
genomic: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATCgtaagctcgc ... cttctcacagGTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCT
EST: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATC GTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCTEST: gi|88433349|gb|CI591789.1|CI591789
genomic: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATCgtaagctcgc ... cttctcacagGTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCT
EST: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATC GTATACTCAAGGACTTGCTG
genomic: CGGCGCCCCGTGCGACGACCCCAAGATCTTCCGCAACATCTGCCGGGATCgtaagctcgc ... cttctcacagGTATACTCAAGGACTTGCTG
gtatcatctgatcgctgatgccgcgcgaatcgatcgcttgctgctcttctcacagGTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCTCATGGAAG
cgctgat putative branch site (score: 10)
cttgctgctcttctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcgctcctcccaccccccacctcttctctgttcctcgtgtttatctatgtctgtatcatctgatcgctgatgccgcgcgaatcgatcgcttgctgctcttctcacagGTATACTCAAGGACTTGCTGCAGCCGGACAAAGATAAGGAGACCAAAAGCTCATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG