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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcagGTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGCGGTGGTTTGCGGCCTCATCCTCGGCATCCTATACG

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 3'ss of exon 1
gtaagtagtatacatatacatttccactctttcctctatcccattgcgca-tctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcagGTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGCGGTGGTTTGCGGCCTCATCCTCGGCATCCTATACG
                   |    ||| |    | || |  |  | |    ||| || | |  |   | ||||      |   ||||| |||  |        | |||||||||| || |||||||||||||   |||| ||| | ||||||| ||  |||||||| || ||||||||| ||||||||||||||||||
-----------------gtaacctcacccccctcgctgtttccctaccttctcttcttccatccgtccgctga------tgatttggacccgcct--------tccctgcagGTCCGTCGGGAAGAGGCTCAGGACCGCGCTCATCTGGGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTCCTCGGCATCCTATACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671154|gb|CK059840.1|CK059840
EST:     TTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAA                         GTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGC
genomic: TTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagta ... cttcctgcagGTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGC
EST: gi|58667548|gb|CK056234.1|CK056234
EST:     TTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAA                         GTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGC
genomic: TTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagta ... cttcctgcagGTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcagGTCAGTGGGGAAGAGGCTCACCTCCGCTCTCCTGTGGGTCGCCGTCTCCGCGGTGGTTTGCGGCCTCATCCTCGGCATCCTATACG
                                          ttgcttcct  CT-rich tract