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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctcctcgtccctcctgcacatccccttctactcgcgtgcacgccaaatccctaaacccctggctcctctccgcagGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGGCCGGCGCCACCGACG

Basic information

species Oryza sativa
transcript LOC_Os06g03676.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G078458_T01 (Zea mays), 3'ss of exon 1
----------gttgctcctcgtccc-tcctgcacatccccttctactcgcgtgcacgccaaatccctaaacccctggctcctctccgcagGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCC---GAGGCCGGCGCCACCGACG
           |  ||| |   ||  ||| |  ||  || |||| |||   |  |  || ||||||  ||||| |  ||   | |||||| |||||||||||||||||||| ||||||||||||||   |||||| || ||||||  || || || ||||||||||||   ||| | ||| ||| |||||
gtcgccccctctctctctttcccctgtcccgtccaatcctttct-ctcctctaaaaccctaatccccgaaccc-tccctttccgccgcagTCCAACGGCGCCGACCTCCGCAGCTGCACGATCCGCGCATGCGGCGGCAAGGGCTTGGGGGTTTTTTCCACCGCCGCCCCCGAGCCGGGCTCCAACGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccccttctactcgcgtgcacgccaaatccctaaacccctggctcctctccgcagGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGGCCGGCGCCACCGACG
                            ccctaaa  putative branch site (score: 3)
                                   cccctggctcctctcc  CT-rich tract