1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcatccacatcctctttctgattcatgtttctggtgagcaccaggagtacttacatctggaatttgcttgcgttaaccctagcttctcttctaggtctggaagaagctcttctcctccttaaacctctcttaatacaactagtagtaacagtttgttggatccgccccttgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTTCCAAAGGATGCGAGTAACGTTAACCATAGGTGTTATTGGCCTCTGTGT
species | Oryza sativa |
transcript | LOC_Os06g01450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88434333|gb|CI589398.1|CI589398
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88371495|gb|CI602673.1|CI602673
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88386173|gb|CI570808.1|CI570808
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88441461|gb|CI599517.1|CI599517
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|58670983|gb|CK059669.1|CK059669
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88354855|gb|CI614133.1|CI614133
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88317096|gb|CI626739.1|CI626739
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTEST: gi|88412959|gb|CI578810.1|CI578810
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
EST: CGCAGGACGAGTCGCGGGTGCCGATCTCCATCTGCGCCAGGGGAATCCTG GTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
genomic: CGCAGGACGAGTCGCGGCTGCCGATCTCCATCTGCGCCAGGGGAATCCTGgtgagcatcc ... tgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGT
ctctcttaatacaactagtagtaacagtttgttggatccgccccttgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTTCCAAAGGATGCGAGTAACGTTAACCATAGGTGTTATTGGCCTCTGTGT
tagtaac putative branch site (score: 14)
tccgccccttgtctt putative PPT
ttaatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatccacatcctctttctgattcatgtttctggtgagcaccaggagtacttacatctggaatttgcttgcgttaaccctagcttctcttctaggtctggaagaagctcttctcctccttaaacctctcttaatacaactagtagtaacagtttgttggatccgccccttgtcttgcagGTGTAATGGCAAAAGAGCAGAGTGGATCCCCTAAGCCCAGGCAGCCAGTGTTCCAAAGGATGCGAGTAACGTTAACCATAGGTGTTATTGGCCTCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG