1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtagcctcctctttgctaacaaatgctaaaatgctataaacaaaacaatccattacgctcacaatggtttccttacatttttgactcctttccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGGACACACTCAGAAAGGCAGCCCATGCGTGGAAGCGTATCGTCGAGCTCC
species | Oryza sativa |
transcript | LOC_Os06g01390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|58607678|gb|CK035711.1|CK035711
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|29630576|gb|CB635585.1|CB635585
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|58601479|gb|CK012007.1|CK012007
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GEST: gi|58601479|gb|CK012007.1|CK012007
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctag-
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GEST: gi|58682509|gb|CK071196.1|CK071196
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctag-
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGAACCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|29666537|gb|CB662812.1|CB662812
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|58611759|gb|CK039471.1|CK039471
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCG-CGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|88415359|gb|CI586565.1|CI586565
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|88411917|gb|CI571409.1|CI571409
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGEST: gi|29680079|gb|CB676354.1|CB676354
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
EST: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCC GTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
genomic: ACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataa ... tccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAG
caatccattacgctcacaatggtttccttacatttttgactcctttccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGGACACACTCAGAAAGGCAGCCCATGCGTGGAAGCGTATCGTCGAGCTCC
tttttgactcctttcc CT-rich tract
ttacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcctcctctttgctaacaaatgctaaaatgctataaacaaaacaatccattacgctcacaatggtttccttacatttttgactcctttccaatctagGTGTTCCGCAAGGATAACAGGACTATGCTCCCCAGGAAGGAGCTGTTCAAGGACACACTCAGAAAGGCAGCCCATGCGTGGAAGCGTATCGTCGAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- -gcctcct
- - - - - - - - taacaaa
- - - - - - - - - - aaatgct
- - - - - - - - - - - - - - - - - - -aaacaaa