Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataagctcattcccctggtgcattgcatactcataaaatttcttgcttaaaggactcaaaatctatcttagactaatataacatataaattattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG

Basic information

species Oryza sativa
transcript LOC_Os05g51670.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88341083|gb|CI638639.1|CI638639
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58588020|gb|CF986328.1|CF986328
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86890798|gb|CI303980.1|CI303980
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681834|gb|CF310073.1|CF310073
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|11118239|gb|AU163427.1|AU163427
EST:     CGTCAGGGAACTCGCCGGACACAACGCCAACAACCTTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: CGTCAGGGAACTCGCCGGACACAACGCCAACAACCT-CGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88325284|gb|CI675078.1|CI675078
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|66915947|gb|CX102795.1|CX102795
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|2312051|gb|C28206.1|C28206
EST:     GCGTCAGGGAACTCGCCGGACACAACGGCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGGCCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33680274|gb|CF308513.1|CF308513
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86894448|gb|CI308225.1|CI308225
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58690277|gb|CK078964.1|CK078964
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218487153|gb|FG966807.1|FG966807
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88340044|gb|CI650491.1|CI650491
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33798368|gb|CF325041.1|CF325041
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218494080|gb|FG967420.1|FG967420
EST:     CGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCG-TGGACCAAATCTTCTCCTCTCAAAG
genomic: CGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33657924|gb|CF280538.1|CF280538
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|29621545|gb|CB626556.1|CB626556
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33685171|gb|CF313410.1|CF313410
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88444775|gb|CI696203.1|CI696203
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33680128|gb|CF308367.1|CF308367
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681916|gb|CF310155.1|CF310155
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33680884|gb|CF309123.1|CF309123
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33683060|gb|CF311299.1|CF311299
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88414437|gb|CI691602.1|CI691602
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88327106|gb|CI652144.1|CI652144
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88355217|gb|CI651920.1|CI651920
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGAAAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681687|gb|CF309926.1|CF309926
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58586418|gb|CF984726.1|CF984726
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33693008|gb|CF321247.1|CF321247
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|95100880|gb|CI692600.1|CI692600
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGG
EST: gi|88589590|gb|CI705487.1|CI705487
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33682645|gb|CF310884.1|CF310884
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33680697|gb|CF308936.1|CF308936
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88590472|gb|CI709332.1|CI709332
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGNGAAAAGCAAGCGTTGGACCAAATCTT
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTT
EST: gi|88326684|gb|CI658407.1|CI658407
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|25798272|gb|CA754233.1|CA754233
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218479800|gb|FG961978.1|FG961978
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33692560|gb|CF320799.1|CF320799
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33683333|gb|CF311572.1|CF311572
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88365496|gb|CI680137.1|CI680137
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGAATTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88577618|gb|CI674216.1|CI674216
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|29684846|gb|CB681121.1|CB681121
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33679540|gb|CF307779.1|CF307779
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218480773|gb|FG949192.1|FG949192
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33653585|gb|CF276199.1|CF276199
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88581448|gb|CI698438.1|CI698438
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33692738|gb|CF320977.1|CF320977
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88427611|gb|CI689470.1|CI689470
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCT
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCT
EST: gi|33681604|gb|CF309843.1|CF309843
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218495472|gb|FG969371.1|FG969371
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218498358|gb|FG945087.1|FG945087
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33692280|gb|CF320519.1|CF320519
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58592265|gb|CF990573.1|CF990573
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86885743|gb|CI309870.1|CI309870
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218488558|gb|FG963890.1|FG963890
EST:     CCGGTACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: CCGG-ACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88422105|gb|CI688900.1|CI688900
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681223|gb|CF309462.1|CF309462
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33685111|gb|CF313350.1|CF313350
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681821|gb|CF310060.1|CF310060
EST:     GCGTCAGGGAACTCTCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33685904|gb|CF314143.1|CF314143
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88587804|gb|CI705579.1|CI705579
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|87009696|gb|CI310799.1|CI310799
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCGACNACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33688841|gb|CF317080.1|CF317080
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACCTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58590563|gb|CF988871.1|CF988871
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33681511|gb|CF309750.1|CF309750
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86876782|gb|CI309656.1|CI309656
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCCACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86904873|gb|CI310666.1|CI310666
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86895042|gb|CI310287.1|CI310287
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|29662182|gb|CB658457.1|CB658457
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33686993|gb|CF315232.1|CF315232
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33684323|gb|CF312562.1|CF312562
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58657953|gb|CK046633.1|CK046633
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|33693695|gb|CF321934.1|CF321934
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|218501599|gb|FG966518.1|FG966518
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|86901701|gb|CI310463.1|CI310463
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCNACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88302441|gb|CI668287.1|CI668287
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|58689696|gb|CK078383.1|CK078383
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
EST: gi|88467105|gb|CI696464.1|CI696464
EST:     GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAG                         GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
genomic: GCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 50 (downstream exon)
Score: 19

CGTTGTCGTCCTCGACAACCTCGACAACGCCTCCGAGCTCGCCATCCTCCGCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttc ... tattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaaggactcaaaatctatcttagactaatataacatataaattattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG
            aaaatctatcttagac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataagctcattcccctggtgcattgcatactcataaaatttcttgcttaaaggactcaaaatctatcttagactaatataacatataaattattatgcagGTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - -cattccc
- - - - - - - ctggtgc
- - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - -cataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaaa