1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taaacctgagaatatgaatcgtatcattgttgtcaaaatctatttgtgcctaacttcaattatgcctgtgtattgatatacctgtattgaccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGT
species | Oryza sativa |
transcript | LOC_Os05g51630.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCEST: gi|29666785|gb|CB663060.1|CB663060
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCEST: gi|33675058|gb|CF303297.1|CF303297
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
gtgcctaacttcaattatgcctgtgtattgatatacctgtattgaccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGT
tattgac putative branch site (score: 17)
ccttttac CT-rich tract
tattgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacctgagaatatgaatcgtatcattgttgtcaaaatctatttgtgcctaacttcaattatgcctgtgtattgatatacctgtattgaccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGT
- - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - -caaaatc
- - - - - - - - - - - - - - - - - - - - - - -gtgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgta