1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agattttcttttttttcttggtttgcattagcagtatatatgcacacacactcattcctacactaacaatcttactacatcatatcattaacacttgcagGCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGCGGCTATCAACGTCTCGATGGCCGTTGCATTCTTGCTGGTCTTTGCTTTT
species | Oryza sativa |
transcript | LOC_Os05g51630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCATCTTCTTCTTTGCTTCGCCCTTGATTTGTGTGCTGCGTGAACAAG GCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGCEST: gi|33675058|gb|CF303297.1|CF303297
genomic: CTCCATCTTCTTCTTTGCTTCGCCCTTGATTTGTGTGCTGCGTGAACAAGgtaagcctct ... acacttgcagGCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGC
EST: CTTTGCTTCGCCCTTGATTTGTGTGCTGCGTGAACAAG GCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGC
genomic: CTTTGCTTCGCCCTTGATTTGTGTGCTGCGTGAACAAGgtaagcctct ... acacttgcagGCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGC
acacactcattcctacactaacaatcttactacatcatatcattaacacttgcagGCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGCGGCTATCAACGTCTCGATGGCCGTTGCATTCTTGCTGGTCTTTGCTTTT
atatcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattttcttttttttcttggtttgcattagcagtatatatgcacacacactcattcctacactaacaatcttactacatcatatcattaacacttgcagGCCTGTCTAGAGGGCAGCCATGGCCACTGTTTCTGACATCGGCCTCTCCGCGGCTATCAACGTCTCGATGGCCGTTGCATTCTTGCTGGTCTTTGCTTTT
- - - - - - -tttcttg
- - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacatc