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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g51530.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 1
gtaagcatc---ctccccgccttccttccttccttccttccttccgccacca------------------ccatcctcaccct-----------cctcctccgcctcccgcc-cgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
|||| | |    || | |  | ||| ||||||| |||   |  | |  || |                  |   |||| ||             |||||| |  |||| ||| |||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| || |||||||||
gtaatcctgtcgcttctcctcctccctccttccctccaatcgccggaaacgaatcatctagaacacaaggctggcctcgcctcgcctgacctgacctccttccgctcctgccgcgcagTTCAACGTCCCGGACCTCCGCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 1
gtaagc-atcctccccgccttccttccttccttccttccttccgccaccacc--atcctcaccctcctcctccgcctcc--cgcc--cgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
|||||  |||| |    ||  ||   || |||  |   || |||||   |     | ||| |    |  | |||  |||  |  |  |||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
gtaagagatccccttttccgacccctctccctctcactctcccgccggaatttagttctcgcgtcgcctcaccgtatccgccatctgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTTCTCGCCCTCAGCGACGACCTCGTCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 1
gtaagc-atcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
|||||| |||| | ||| |     ||||||       ||  |||  |     |  ||| |    |  | ||| |     | |||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||
gtaagcgatcccctccgacccgtctccttca------cccgccgggat--ttaatctcgcgtagcctcaccgtc-----cgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 1
gtaagcatcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
||||  | |             |        |  || ||| | |  | |     |||      || || | | ||  || ||||||||||| | ||| | ||||||||||| || || ||||| |||||| |||||||||| || |||| ||||
gtaatta-ctaatatataacaataataataataattactttctctgctatt-cgctcgttgatcttcttctcttctggctcgcagTTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTCAGCGATGACCTCGCCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 1
---------------------gtaagcatcctccccgccttccttccttccttccttccttccg-----ccaccaccatcctcaccctcctcctc-----cgcctcccgccc------gcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
                      |     ||   | | | |  | |  ||  ||    ||  |       ||||| |    ||  |  | || |||     |   | ||  ||      |||||||||  ||||| ||||||| ||||| || || |||||||||||| |||||||||||||||||||||||
gtactctctctctctctctctctctctctctctctcacatcacatttttttttataaccaacaaaacaaccaccgcgtctcttccttttcttctcattttcattttccctccaaattcgcagTTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 1
gtaagcatcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
                 ||   |    |  |     |  ||   | |  | ||   |    |  || ||  | || |   ||||||||||| ||||| | |||||| |||| || || ||||| |||||| |||||||||| || |||| ||||
-----------gtaattctatttataataataatcacactctctctctgctatttgcctattgatcttcttcttctctgtcgcagTTCAACATCCCCAACCTCCGCATCGGAACCCTAGACTCTCTCCTCTCCCTCAGCGATGACCTCGCCAAG

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
gtaagcatcctccccgcct-----tccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcc-----cgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
||||| |  ||| |   ||     ||  |  ||  ||    ||  |  ||||| |    || ||  | |  |||    |||| ||     ||||||||||| ||||| ||||||||||||| || || |||||||||||| ||||||||||||||  |||||||
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88365018|gb|CI616437.1|CI616437
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88364121|gb|CI610465.1|CI610465
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88294694|gb|CI602414.1|CI602414
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88343326|gb|CI627286.1|CI627286
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88827859|gb|CI778424.1|CI778424
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|87005013|gb|CI308889.1|CI308889
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88299480|gb|CI574593.1|CI574593
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88407461|gb|CI586302.1|CI586302
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88430052|gb|CI565065.1|CI565065
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGGTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTAGGCACGCTCGACTCCCTCCTCGGCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|66912614|gb|CX099462.1|CX099462
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|2427977|gb|C72440.1|C72440
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58664797|gb|CK053483.1|CK053483
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88423778|gb|CI617130.1|CI617130
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88401806|gb|CI591133.1|CI591133
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|29662007|gb|CB658282.1|CB658282
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88761682|gb|CI771238.1|CI771238
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88415574|gb|CI589166.1|CI589166
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58599761|gb|CK010289.1|CK010289
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88398674|gb|CI598639.1|CI598639
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58595941|gb|CK006469.1|CK006469
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88416976|gb|CI573691.1|CI573691
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|29612869|gb|CB617882.1|CB617882
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88443572|gb|CI597039.1|CI597039
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88432524|gb|CI567563.1|CI567563
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58667113|gb|CK055799.1|CK055799
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88397236|gb|CI580746.1|CI580746
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88434036|gb|CI586914.1|CI586914
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTC-GCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58654107|gb|CK042787.1|CK042787
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88402054|gb|CI593766.1|CI593766
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACTGG                         TTCAACGTCCCCGATCTCCGCGTCGGCA-GCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88389857|gb|CI626626.1|CI626626
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88399964|gb|CI588268.1|CI588268
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACTGG                         TTCAACGTCCCCGATCTCCG-GTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88426951|gb|CI601912.1|CI601912
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88317321|gb|CI627970.1|CI627970
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|218498003|gb|FG943208.1|FG943208
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58656444|gb|CK045124.1|CK045124
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TGCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88415136|gb|CI583959.1|CI583959
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|33653619|gb|CF276233.1|CF276233
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88389232|gb|CI598030.1|CI598030
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58686384|gb|CK075071.1|CK075071
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|56157721|gb|C25980.2|C25980
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58600826|gb|CK011354.1|CK011354
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88433541|gb|CI594355.1|CI594355
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAAAGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|29613101|gb|CB618114.1|CB618114
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58606956|gb|CK034989.1|CK034989
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58681691|gb|CK070378.1|CK070378
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTNCAGGGTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58660134|gb|CK048814.1|CK048814
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58678473|gb|CK067160.1|CK067160
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88717279|gb|CI740789.1|CI740789
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88740192|gb|CI763700.1|CI763700
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|86906056|gb|CI292587.1|CI292587
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|428004|gb|D24151.1|D24151
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTNGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88403992|gb|CI601402.1|CI601402
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88738972|gb|CI762480.1|CI762480
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58688997|gb|CK077684.1|CK077684
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88433997|gb|CI586875.1|CI586875
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88392446|gb|CI612920.1|CI612920
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88402768|gb|CI613216.1|CI613216
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88426906|gb|CI584269.1|CI584269
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTACCCTCCTCGCCCT
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACT-CCCTCCTCGCCCT
EST: gi|88360528|gb|CI608380.1|CI608380
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|33664188|gb|CF295155.1|CF295155
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|27578007|gb|CB000702.1|CB000702
EST:     CTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: CTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58660817|gb|CK049497.1|CK049497
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCGACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88745715|gb|CI769075.1|CI769075
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88372240|gb|CI619570.1|CI619570
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGGCACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|58597260|gb|CK007788.1|CK007788
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|29613962|gb|CB618975.1|CB618975
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
EST: gi|88406511|gb|CI599004.1|CI599004
EST:     GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGG                         TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC
genomic: GCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagcatcc ... ccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
                      tcctcac  putative branch site (score: 2)
                ccaccatcctcaccct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcatcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC