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...tttttaacaaaaaattcatttgggagacacaagtgaaattattagtatactatgggaacatctctacctaacccgcctaactttgtaatttactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACGAGGATGAAATAATTCAGGAGTGCAAAGCGCTGAATACTCGTCTCATAA
species | Oryza sativa |
transcript | LOC_Os05g51490.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88402355|gb|CI596216.1|CI596216
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88333410|gb|CI642447.1|CI642447
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88571158|gb|CI662531.1|CI662531
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88426371|gb|CI576613.1|CI576613
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88341949|gb|CI644286.1|CI644286
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88338584|gb|CI645838.1|CI645838
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88348978|gb|CI654022.1|CI654022
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88411328|gb|CI564449.1|CI564449
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|58607323|gb|CK035356.1|CK035356
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88358042|gb|CI650778.1|CI650778
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88718021|gb|CI741531.1|CI741531
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|29669887|gb|CB666162.1|CB666162
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88407509|gb|CI586350.1|CI586350
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88390893|gb|CI611119.1|CI611119
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACEST: gi|88407840|gb|CI588869.1|CI588869
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
EST: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCG GTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
genomic: CCGTCGCCGCCATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGgtgagtccct ... tactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGAC
tatactatgggaacatctctacctaacccgcctaactttgtaatttactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACGAGGATGAAATAATTCAGGAGTGCAAAGCGCTGAATACTCGTCTCATAA
gcctaac putative branch site (score: 3)
taactttgtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaacaaaaaattcatttgggagacacaagtgaaattattagtatactatgggaacatctctacctaacccgcctaactttgtaatttactggtcagGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACGAGGATGAAATAATTCAGGAGTGCAAAGCGCTGAATACTCGTCTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -caaaaaa
- - - - - - - -tcatttg
- - - - - - - - - - - - - acacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcct